Hi Jo - it reads as if the contested plot and registered extents are large enough to be 'seen' on the title plan. That suggests to me that if they have in effect split the contested plot the 'best' option would be to transfer the part to the neighbours
Registering land or property with HM Land Registry: Change the registered owner name - GOV.UK
Whilst general boundaries can be described as 'loose' they aren't so loose that a significant change in position doesn't need to be dealt with effectively. Likewise a boundary agreement or determined boundary won't formalise a significant change of the type you have described.
Leaving things as described is likely to pose an issue for your parents or the neighbours should they come to sell/remortgage for example if a buyer/lender spots the boundary 'difference' for example